Protein Data- Proteome
MeSH ID: D020543
Description:
The protein complement of an organism coded for by its genome.
Best practice for sharing this type of data:
Refer to the minimum information about a proteomics experiment (MIAPE) reporting guidelines for an outline of the materials that shoulld be presented along with all relevant datasets.
Most suitable repositories:
Data may be submitted to repositories such as Biological General Repository for Interaction Datasets, Database of Interacting Proteins, Reference Sequence Database, Expression Atlas, NCBI Identical Protein Groups, FlyBase, Giga Science Database, Influenza Research Database, IntAct molecular interaction database, Life Science Database Archive, Mass Spectrometry Virtual Interactive Environment, Pfam, PRIDE, Protein Data Bank Japan, ProteomeXchange, Saccharomyces Genome Database, The Global Proteome Machine Database, UniProt Knowledgebase, and Xenopus laevis and tropicalis biology and genomics resource.
Best practice for indicating re-use of existing data:
For public datasets please provide a DOI or other stable identified for the dataset itself *and* include a citation for the dataset in the reference list. Be sure to indicate exactly which data has been re-used, particularly when multiple versions of the dataset exist. In many cases, this is best achieved by sharing the code used to extract the part of the data that you analyzed. In some cases it may be best to share the exact dataset(s) you analyzed as well.
For access-controlled data authors should provide a link to instructions for obtaining access (e.g. here is the information page for ADNI (Alzheimer's Disease Neuroimaging Initiative): http://adni.loni.usc.edu/data-samples/access-data/).
When re-using a private dataset from a previous study please contact the data owners to discuss how the data can be made public.
